svn - Revision 8544: /sbeams/trunk/sbeams/lib/scripts/PeptideAtlas
..
Batch_Query.pl
PA2ProteomeXchange.pl
PASSEL2ProteomeXchange.pl
PASS_passwordReminder.pl
PAidentlist2mayu.pl
SearchProteins.pl
UpdatePeptideXspeciesMapping.pl
addLfdr2MayuOutput.pl
add_pabst_build_resource.pl
back_populate_sample_accessions.pl
buildDetailTables.pl
build_cache_pages.pl
cache_PASSEL_experiment_info.pl
cache_build_info.pl
calcPeptideOrder.pl
calcProteinStatistics.pl
checkPipelineInput.pl
checkProtNtermEvidence.pl
coleslaw.pl
compare_SwissProt_idents_across_builds.pl
createPipelineInput.pl
create_PASS_Json.pl
create_PTM_summary.pl
create_atlas_build_tables.pl
dump_SearchKeys.pl
estimateConcentrations.pl
export_atlas_build.pl
export_build_to_DAS.pl
export_build_to_DAS.txt
export_pabst_builds.pl
export_ptp_to_DAS.pl
extract_ionlibrary_subset.pl
fetch_best_peptides.pl
figures/
find_collisions.pl
find_peps_not_in_swiss.pl
getPApFromSequence.pl
get_build_aminoacid_usage.pl
get_glyco_peptides.pl
get_prot_chrom_info.pl
get_prot_info_for_bss.pl
get_public_repository_dataset.pl
get_table_columns.pl
loadDomainProteinList.pl
loadHPPPTMList.pl
load_PTM_summary.pl
load_QT5500_transition_groups.pl
load_RTCatalog.pl
load_RTcatalog_scores.pl
load_SEL_runs.pl
load_SRM_experiment.pl
load_SRM_run.pl
load_atlas_build.pl
load_build_stats.pl
load_chromatogram_source_file.pl
load_consensus_library.pl
load_dia_library.pl
load_info_Origene.pl
load_neXtProt_mapping.pl
load_pabst_peptides.pl
load_peptide_NET_NMC.pl
load_theo_proteotypic_scores.pl
load_uniprot_db.pl
load_validated_transitions.pl
make_Mayu_database.pl
make_SEL_experiment_Public.pl
map_PASSEL_to_proteins.pl
map_PASSEL_to_swissprot.pl
map_peptides.pl
model_export.pl
pabst_evaluate_peptides.pl
peptide_atlas_schema.sh
pipeline/
populate_putative_protein_tables.pl
processPAprotlist.pl
publicDataRepository2PA.pl
purge_PASSEL_protein_mapping.pl
rebuildKeySearch.pl
remove_PASSEL_peptide_ion.pl
setup_PASSEL_load.pl
srm2json.pl
statistics/
sync_peptide_accessions.pl
transfer_PAsample_to_PASS.pl
trimMayuOutput.pl
updateProteotypicScores.pl
update_atlas_index.pl
update_buildpage.pl
update_instance_sample.pl
update_modified_peptide_instance.pl
update_n_obs.pl
update_pabst_peptide_stats.pl
update_peptide_mwpi.pl
update_sample_repository_identifiers.pl
update_search_batch_statistics.pl
validate_PASSEL_transition_list.pl
write_atlas_build_sample_records.pl
write_experiment_outfile.pl
write_qualscore_script_for_atlas.pl
write_repository_lists.pl
write_repository_lists_tranche.pl