Remember to set this directory (e.g /root/to/sbeams/lib/java) in your CLASSPATH.

#### Make sure Java is in your PATH
which java javac
#setenv PATH /tools/java/jdk1.5.0/bin:$PATH
#rehash

#### Set SBEAMS env variable for convenience only
#setenv SBEAMS /net/dblocal/www/html/dev2/sbeams

#### Add this directory to the CLASSPATH
setenv CLASSPATH $SBEAMS/lib/java:$CLASSPATH

#### Add junit to the CLASSPATH if necessary
setenv CLASSPATH $SBEAMS/usr/java/share/util/junit.jar:$CLASSPATH

 
cd $SBEAMS/lib/java/SBEAMS
make

cat > .infoFile
user=edeutsch
password=xxxx
url=http://db.systemsbiology.net/dev2/sbeams
^D


cd $SBEAMS/lib/java/SBEAMS
java SBEAMS.SBEAMSClient

- Popup dialog box should request the username and password
- Then a tsv list of organisms should be written to stdout

rm .infoFile
make clean