#!/usr/local/bin/perl ############################################################################### # Program : repository.cgi # Author : Zhi Sun # Description : This script shows the PeptideAtlas repository page # # SBEAMS is Copyright (C) 2000-2011 Institute for Systems Biology # This program is governed by the terms of the GNU General Public License (GPL) # version 2 as published by the Free Software Foundation. It is provided # WITHOUT ANY WARRANTY. See the full description of GPL terms in the # LICENSE file distributed with this software. # ############################################################################### use strict; use CGI::Carp qw(fatalsToBrowser croak); use FindBin; use POSIX qw(ceil floor); use lib "$FindBin::Bin/../../lib/perl"; use vars qw ($sbeams $sbeamsMOD $q $current_contact_id $current_username); use SBEAMS::Connection qw($q $log); use SBEAMS::Connection::Settings; use SBEAMS::Connection::Authenticator; use SBEAMS::PeptideAtlas; use SBEAMS::PeptideAtlas::Settings; use SBEAMS::PeptideAtlas::Tables; $sbeams = new SBEAMS::Connection; my $atlas = new SBEAMS::PeptideAtlas; $atlas->setSBEAMS($sbeams); exit unless ($current_username = $sbeams->Authenticate( permitted_work_groups_ref=>['PeptideAtlas_user','PeptideAtlas_admin', 'PeptideAtlas_readonly', 'PeptideAtlas_exec'], allow_anonymous_access=>1, )); $atlas->displayGuestPageHeader(); my $html = qq~ Repository

RAW DATA AVAILABLE FOR DOWNLOAD

It is our policy to make publicly available for download as much of the raw data we use to build the PeptideAtlas as possible. This includes datasets that have been previously published or otherwise released by the data producers. If you download and use these data in a published work, please cite the associated article (or data contributors if unpublished); an acknowledgement of the PeptideAtlas repository would also be appreciated. There are also many unpublished raw datasets used to build the PeptideAtlas, and these are not made available for download until publication or release by the producers.


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~; print $html; $atlas->display_page_footer(); exit;